Publikationen
2024
Muhammed Afthab, Shadi Hambo, Hyunji Kim, Ali Alhamad, Hani Harb; Particulate matter-induced epigenetic modifications and lung complications; European Respiratory Review 2024; 33(174): 240129; DOI: https://doi.org/10.1183/16000617.0129-2024
Hani Harb, Mehdi Benamar, Rima Kaddurah-Daouk, Wanda Phipatanakul, Talal Chatila, Elena Crestani; Untargeted Metabolomic Profiling Of Asthma Severity In Children In Relation To IL4R576 Variant Genotype And Notch4 expression; Journal of Allergy and Clinical Immunology; Vol 153, Issue 2, Supplement; 25 Feb 2024
Mehdi Benamar, Peggy S. Lai, Ching-Ying Huang, Qian Chen, Fatma Betul Oktelik, Paola Contini, Muyun Wang, Daniel Okin, Elena Crestani, Jason Fong, Tsz Man Chan Fion, Merve Nida Gokbak, Hani Harb, et all; Notch4 regulatory T cells and SARS-CoV-2 viremia shape COVID19 survival outcome; Allergy; 03 October 2024; https://doi.org/10.1111/all.16333
Melanie L. Conrad, Gabriela Barrientos, Xuejun Cai, Saikat Mukherjee, Mrinmoy Das, Emmanuel Stephen-Victor, Hani Harb; Regulatory T cells and their role in allergic disease; Allergy, Sep 2024, https://doi.org/10.1111/all.16326
Alashkar Alhamwe B, Gao Z, Alhamdan F, Harb H, Pichene M, Garnier A, El Andari J, Kaufmann A, Graumann PL, Kesper D, Daviaud C, Garn H, Tost J, Potaczek DP, Blaser MJ, Renz H. Intranasal administration of Acinetobacter lwoffii in a murine model of asthma induces IL-6-mediated protection associated with cecal microbiota changes. Allergy. 2023 May;78(5):1245-1257. doi: 10.1111/all.15606. Epub 2022 Dec 11.PMID: 36458896
Madžar D, Nickel FT, Rothhammer V, Goelitz P, Geißdörfer W, Dumke R, Lang R. Meningitis and intracranial abscess due to Mycoplasma pneumoniae in a B cell-depleted patient with multiple sclerosis. Eur J Clin Microbiol Infect Dis. 2024 Sep 13. doi: 10.1007/s10096-024-04935-3.
Geissler M, Dumke R. Comparative inactivation of the RNA of the delta and omicron variants of SARS-CoV-2 in wastewater of five municipalities in southeast Germany. Water. 2024 16(8), 1193. doi: 10.3390/w16081193.
Dumke R. The high-incidence period of Mycoplasma pneumoniae infections 2023/2024 in southeast Germany was associated with a low level of macrolide resistance. Infection. 2024 Jul 1. doi: 10.1007/s15010-024-02336-4.
Prashanth S. Ramachandran; Benjamin W. Okaty; Molly Riehs; Anne Wapniarski; Daniel Hershey; Hani Harb; et al; Multiomic Analysis of Neuroinflammation and Occult Infection in Sudden Infant Death Syndrome JAMA Neurol. Published online January 29, 2024. doi:10.1001/jamaneurol.2023.5387
Hijazi MM, Siepmann T, El-Battrawy I, Aweimer A, Schröttner P, Mirus M, Podlesek D, Schackert G, Juratli TA, Eyüpoglu IY, Filis A. The impact of concomitant infective endocarditis in patients with spondylodiscitis and isolated spinal epidural empyema and the diagnostic accuracy of the modified duke criteria. Front Surg. 2024 Jan 9;10:1333764. doi: 10.3389/fsurg.2023.1333764. eCollection 2023.
Geissler M, Schröttner P, Oertel R, Dumke R. Enterococci, Van Gene-Carrying Enterococci, and Vancomycin Concentrations in the Influent of a Wastewater Treatment Plant in Southeast Germany. Microorganisms. 2024 Jan 12;12(1):149. doi: 10.3390/microorganisms12010149.
The zoonotic pathogen Wohlfahrtiimonas chitiniclastica - current findings from a clinical and genomic perspective. BMC Microbiol. 2024 Jan 3;24(1):3. doi: 10.1186/s12866-023-03139-7.
Hijazi MM, Siepmann T, El-Battrawy I, Schröttner P, Podlesek D, Schackert G, Juratli TA, Eyüpoglu IY, Filis A. The importance of the bacterial spectrum in the clinical diagnostics and management of patients with spontaneous pyogenic spondylodiscitis and isolated spinal epidural empyema: a 20-year cohort study at a single spine center. BMC Infect Dis. 2024 Jan 2;24(1):39. doi: 10.1186/s12879-023-08946-x.
2023
de la Cruz Barron M, Kneis D, Geissler M, Dumke R, Dalpke A, Berendonk TU. Evaluating the sensitivity of droplet digital PCR for the quantification of SARS-CoV-2 in wastewater. Front. Public Health. 2023, 11:1271594. doi: 10.3389/fpubh.2023.1271594.
Horst TS, Armann JP, Doenhardt M, Dreßen S, Czyborra P, Schneider J, Gano C, Dalpke A, Lück C, Bluschke A, Wekenborg M, Berner R, Blankenburg J. FamilyCoviDD19: results of a cross-sectional study-long-term outcomes of infected and uninfected household members. Fam. Med. Community Health. 2023, 11(3):e002057. doi: 10.1136/fmch-2022-002057.
Use of passive sampling to characterize the presence of SARS-CoV-2 and other viruses in wastewater. Food Environ. Virol. 2023 Dec 20. doi: 10.1007/s12560-023-09572-1
Shadi Hambo, Hani Harb; Extracellular Vesicles and Their Role in Lung Infections; Int. J. Mol. Sci. 2023, 24(22), 16139; https://doi.org/10.3390/ijms242216139
Kowalczyk B., Petzold M., Kaczyński Z., Szuster-Ciesielska A., Luchowski R., Gruszecki W.I., Fuchs B., Galuska C.E., Choma A., Tarasiuk J., Palusińska-Szysz M. Lipopolysaccharide of Legionella pneumophila Serogroup 1 Facilitates Interaction with Host Cells. Int. J. Mol. Sci.2023,24(19), 14602, https://doi.org/10.3390/ijms241914602
Nikolaos Perakakis, Hani Harb, et al; Mechanisms and clinical relevance of the bidirectional relationship of viral infections with metabolic diseases; Lancet Diabetes Endocrinol; 2023 Sep;11(9):675-693. doi: 10.1016/S2213-8587(23)00154-7. Epub 2023 Jul 28.
Hijazi MM, Siepmann T, El-Battrawy I, Schröttner P, Podlesek D, Engellandt K, Schackert G, Juratli TA, Eyüpoglu IY, Filis A. The Efficacy of Daily Local Antibiotic Lavage via an Epidural Suction-Irrigation Drainage Technique in Spondylodiscitis and Isolated Spinal Epidural Empyema: A 20-Year Experience of a Single Spine Center. J Clin Med. 2023 Aug 2;12(15):5078.
Riedel T, Bunk B, Schröttner P. Editorial: Characterization of rare and recently first described human pathogenic bacteria. Front Cell Infect Microbiol. 2023 Jul 3;13:1212627. doi: 10.3389/fcimb.2023.1212627. eCollection 2023. ebook: Frontiers Media SA. doi: 10.3389/978-2-8325-3019-1
AkinnurunO.M., Narvaez EncaladaM., Orth J., Petzold M., Böttcher S., Diedrich S., Smitka M., SchröttnerP. Enterovirus A71-associated acute flaccid paralysis in a pediatric patient: a case report J Med Case Rep. 2023 Jul 19;17(1):310. doi: 10.1186/s13256-023-04041-6.
FelberJ., Gross B., Rahrisch A., WaltersbacherE., Trips E., Schröttner P., FitzeG., Jurek Schultz J. Bacterial pathogens in pediatric appendicitis: a comprehensive retrospective study Front Cell Infect Microbiol. 2023 May 9;13:1027769 doi:10.3389/fcimb.2023.1027769. eCollection 2023
Lehfeld A. S., Petzold M., Brodhun B., Haas W., Buchholz U. How valid is the 2- to 10-day incubation period for cases of Legionnaires' disease? – A reappraisal in the context of the German LeTriWa study; Berlin, 2016–2020; Epidemiology & Infection; DOI: 10.1017/S0950268823000833
Lehfeld A. S., Reber F., Lewandowsky M., Jahn H. J., Lück, C., Petzold M., Schaefer B., Germelmann A.-R., Lorenz K., Buchholz U.; Could oral hygiene prevent cases of at-home-acquired Legionnaires' disease? – results of a comprehensive case-control study on infection sources, risk and protective behaviors Frontiers in Microbiology, DOI:10.3389/fmicb.2023.1199572
Oertel R, Schubert S, Helm B, Mayer R, Dumke R, El-Armouche A, Renner B. Drug consumption in German cities and municipalities during the COVID-19 lockdown: a wastewater analysis. Naunyn Schmiedebergs Arch Pharmacol. 2023 Jan 12:1-14. doi: 10.1007/s00210-022-02377-2.
Müller S, von Bonin S, Schneider R, Krüger M, Quick S, Schröttner P.; Shewanella putrefaciens, a rare human pathogen: A review from a clinical perspective. Front Cell Infect Microbiol. 2023 Feb 2;12:1033639. doi: 10.3389/fcimb.2022.1033639. eCollection 2022.
Barbara Yang, Hazel Wilkie, Mrinmoy Das, Maheshwor Timilshina, Wayne Bainter, Brian Woods, Michelle Daya, Meher P.Boorgula, Rasika A.Mathias, Peggy Lai, Carter R. Petty, Edie Weller, Hani Harb, Talal A.Chatila, Donald Y.M.Leung, Lisa A.Beck, Eric L.Simpson, Tissa R.Hata, Kathleen C.Barnes, Wanda Phipatanakul, Raif S.Geha; The IL-4Rα Q576R polymorphism is associated with increased severity of atopic dermatitis and exaggerates allergic skin inflammation in mice; Journal of Allergy and Clinical Immunology; https://doi.org/10.1016/j.jaci.2023.01.011
Harb, Hani; Chatila, Talal A.; Regulatory T-cells in asthma; Current Opinion in Allergy and Clinical Immunology, January 05, 2023. | DOI: 10.1097/ACI.0000000000000887
2022
Buchholz U, Lehfeld AS, Jahn HJ, Brodhun B, Lewandowsky MM, Reber F, Adler K, Bochmann J, Förster C, Koch M, Schreiner Y, Stemmler F, Gagell C, Harbich E, Petzold M, Bärwolff S, Schilling B, Beyer A, Schmidt S, Geuß-Fosu U, Hänel M, Larscheid P, Schumacher J, Murajda L, Savaskan N, Morawski K, Peters U, Hinzmann A, Pitzing R, Bednarz E, Seidentopf T, Widders G, Abdelgawad I, Wischnewski N, Zuschneid I, Atmowihardjo I, Arastéh K, Behrens S, Creutz P, Elias J, Gregor M, Kahl S, Kahnert H, Kimmel V, Lehmke J, Migaud P, Mikolajewska A, Moos V, Naumann MB, Pankow W, Scherübl H, Schmidt B, Schneider T, Stocker H, Suttorp N, Thiemig D, Gollnisch C, Mannschatz U, Haas W, Schaefer B, Lück C; Infektionsquellensuche bei ambulant erworbenen Fällen von Legionärskrankheit – Ergebnisse der LeTriWa-Studie; Berlin, 2016–2020 – Teil 1 und 2 (Studienmethodik), Teil 2 (Ergebnisse und Diskussion); DOI 10.25646/10169 und 10170
Djin Ye Oh et al & Integrated Molecular Surveillance for SARS-CoV-2 (IMS-SC2) Laboratory Network (Markus Petzold); Advancing Precision Vaccinology by Molecular and Genomic Surveillance of Severe Acute Respiratory Syndrome Coronavirus 2 in Germany, 2021; Clin Infect Dis. 2022 Aug 15;75(Suppl 1):S110-S120. doi: 10.1093/cid/ciac399
Haehner A, Marquardt B, Kardashi R, de With K, Rößler S, Landis BN, Welge-Luessen A, Hummel T. SARS-CoV-2 Leads to Significantly More Severe Olfactory Loss than Other Seasonal Cold Viruses.; Life (Basel) 2022 Mar 21;12(3):461. doi: 10.3390/life12030461.PMID: 35330212 Free PMC article.
Bilal Alashkar Alhamwe, Zhan Gao, Fahd Alhamdan, Hani Harb, Matthieu Pichene, Abel Garnier , Jihad El Andari, Andreas Kaufmann, Peter L. Graumann, Dörthe Kesper; Intranasal administration of Acinetobacter lwoffii in a murine model of asthma induces IL-6-mediated protection associated with cecal microbiota changes.; European journal of allergy and clinical immunology; https://doi.org/10.1111/all.15606
Lindemann D., Herchenröder O. (2022). Foamy Viruses. Howley P. Knipe D. (Eds), In: Fields Virology, 7th Edition, Vol. 3: RNA Viruses, Chapter 20, p.679-705. Philadelphia: Wolters Kluwer.
Munz CM, Kreher H, Erdbeer A, Richter S, Westphal D, Yi B, Behrendt R, Stanke N, Lindel F, Lindemann D (2022). Efficient production of inhibitor-free foamy virus glycoprotein-containing retroviral vectors by proteoglycan-deficient packaging cells. Mol. Ther. Methods Clin. Dev., 26: 394-412. doi: 10.1016/j.omtm.2022.07.004. https://pubmed.ncbi.nlm.nih.gov/36034773/
Helm B, Geissler M, Mayer R, Schubert S, Oertel R, Dumke R, Dalpke A, El-Armouche A, Renner B, Krebs P. Regional and temporal differences in the relation between SARS-CoV-2 biomarkers in wastewater and estimated infection prevalence - Insights from long-term surveillance. Sci. Total Environ. 2023, 857, 159358. doi: 10.1016/j.scitotenv.2022.159358.
Dumke R, Geissler M, Skupin A, Helm B, Mayer R, Schubert S, Oertel R, Renner B, Dalpke A.H.Simultaneous detection of SARS-CoV-2 and influenza virus in wastewater of two cities in southeastern Germany, January to May 2022. Int. J. Environ. Res. Public Health 2022, 19(20), 13374. doi 10.3390/ijerph192013374.
Bigge R., Bunk B., Rudolph W.W., Gunzer F., Coldewey S.M., Riedel T., Schröttner P. Comparative study of different diagnostic routine methods for the identification of Acinetobacter radioresistensMicroorganisms 2022, 10(9), 1767
Benamar M, Harb H, Chen Q, Wang M, Chan TMF, Fong J, Phipatanakul W, Cunningham A, Ertem D, Petty CR, Mousavi AJ, Sioutas C, Crestani E, Chatila TA. A common IL-4 receptor variant promotes asthma severity via a Treg cell GRB2-IL-6-Notch4 circuit. Allergy. 2022 Jul 16. doi: 10.1111/all.15444. Online ahead of print.
Hu M, Alashkar Alhamwe B, Santner-Nanan B, Miethe S, Harb H, Renz H, Potaczek DP, Nanan RK. Short-Chain Fatty Acids Augment Differentiation and Function of Human Induced Regulatory T Cells. Int J Mol Sci. 2022 May 20;23(10):5740. doi: 10.3390/ijms23105740.
Banzon TM, Kelly MS, Bartnikas LM, Sheehan WJ, Cunningham A, Harb H, Crestani E, Valeri L, Greco KF, Chatila TA, Phipatanakul W, Lai PS. Atopic Dermatitis Mediates the Association Between an IL4RA Variant and Food Allergy in School-Aged Children. J Allergy Clin Immunol Pract. 2022 Aug;10(8):2117-2124.e4. doi: 10.1016/j.jaip.2022.04.042. Epub 2022 May 16.
Harb H, Chatila TA. Recent patents in allergy and immunology: Method for treating asthma or allergic disease via anti-Notch4 mAb. Allergy. 2022 Jul;77(7):2260-2261. doi: 10.1111/all.15317. Epub 2022 Apr 28.
TRPV4 Stimulation Level Regulates Ca2+-Dependent Control of Human Corneal Endothelial Cell Viability and Survival. ; Donau J, Luo H, Virta I, Skupin A, Pushina M, Loeffler J, Haertel FV, Das A, Kurth T, Gerlach M, Lindemann D, Reinach PS, Mergler S, Valtink M. ;Membranes (Basel). 2022 Feb 28;12(3):281. doi: 10.3390/membranes12030281.
Kopf A, Bunk B, Coldewey SM, Gunzer F, Riedel T, Schröttner P.Comparative Genomic Analysis of the Human Pathogen Wohlfahrtiimonas Chitiniclastica Provides Insight Into the Identification of Antimicrobial Resistance Genotypes and Potential Virulence Traits. Front Cell Infect Microbiol. 2022 Jul 7;12:912427.
Schultz J, Wruck JE, Trips E, Pfeiffer R, Grählert X, Münchow S, Schröttner P, Dragu A, Fitze G. Semi-occlusive management of fingertip injuries with finger caps: A randomized controlled trial in children and adults. Medicine (Baltimore). 2022 Jul 8;101(27):e29324.
Dumke R (2022): Molecular tools for typing Mycoplasma pneumoniae and Mycoplasma genitalium. Front. Microbiol. 13:904494. doi: 10.3389/fmicb.2022.904494
Meyer Sauteur P, Beeton ML, Uldum SA, Bossuyt N, Vermeulen M, Loens K, Pereyre S, Bebear C, Kese D, Day J, Afshar B, Chalker VJ, Greub G, Nir-Paz R, and Dumke R. Mycoplasma pneumoniae detections before and during the COVID-19 pandemic: results of a global survey, 2017 to 2021. Euro Surveill. 2022; 27(19):pii=2100746; doi.org/10.2807/1560-7917.
Changes in Microbiome Dominance Are Associated With Declining Lung Function and Fluctuating Inflammation in People With Cystic Fibrosis Dario L. Frey, C. Bridson, S. Dittrich, S. Y. Graeber, M. Stahl, S. Wege, F. Herth, O. Sommerburg, C. Schultz, A. Dalpke, M. A. Mall and S. Boutin; Frontiers in Microbiology 2022 Vol. 13; DOI: 10.3389/fmicb.2022.885822
Stadtmüller M, Laubner A, Rost F, Winkler S, Patrasová E, Šimůnková L, Reinhardt S, Beil J, Dalpke AH, and Yi 20 B (2022): Emergence and spread of a sub-lineage of SARS-CoV-2 Alpha variant B.1.1.7 in Europe, and with further evolution of spike mutation accumulations shared with the Beta and Gamma variants. Virus Evol, 8(1), 1-9, doi.org/10.1093/ve/veac010
Mentrup T, Stumpff-Niggemann AY, Leinung N, Schlosser K, Schubert K, Wehner R, Tunger A, Schatz V, Neubert P, Gradtke AC, Wolf J, Rose-John S, Saftig P, Dalpke A, Jantsch J, Schmitz M, Fluhrer R, Jacobsen I and Schröder B (2022): Phagosomal signalling of the C-type lectin receptor Dectin-1 is terminated by intramembrane proteolysis. Nat Comm 13(1):1880. doi: 10.1038/s41467-022-29474-3.
Grinberg S, Schubert S, Hochauf-Stange K, Dalpke AH, Narvaez Encalada M (2022): Saving time in blood culture diagnostics: A prospective evaluation of the Qvella FAST-PBC PrepTM application on the FastTM System.J Clin Microbiol, doi: 10.1128/jcm.02533-21, in press
Tony-Odigie A, Wilke L, Boutin S, Dalpke AH and Yi B (2022): Commensal bacteria in the cystic fibrosis airway microbiome reduce P. aeruginosa induced inflammation. Front Cell Infect Microbiol 12:824101, doi: 10.3389/fcimb.2022.824101
2021
ICTV Virus Taxonomy Profile: Retroviridae 2021. Coffin J, Blomberg J, Fan H, Gifford R, Hatziioannou T, Lindemann D, Mayer J, Stoye J, Tristem M, Johnson W, Ictv Report Consortium. J Gen Virol. 2021 Dec;102(12):001712. doi: 10.1099/jgv.0.001712.
Viral infiltration of pancreatic islets in patients with COVID-19. Steenblock C, Richter S, Berger I, Barovic M, Schmid J, Schubert U, Jarzebska N, von Mässenhausen A, Linkermann A, Schürmann A, Pablik J, Dienemann T, Evert K, Rodionov RN, Semenova NY, Zinserling VA, Gainetdinov RR, Baretton G, Lindemann D, Solimena M, Ludwig B, Bornstein SR. Nat Commun. 2021 Jun 10;12(1):3534. doi: 10.1038/s41467-021-23886-3.
The Unique, the Known, and the Unknown of Spumaretrovirus Assembly. Lindemann D, Hütter S, Wei G, Löchelt M. Viruses. 2021 Jan 13;13(1):105. doi: 10.3390/v13010105.
Individual HLA-A, -B, -C, and -DRB1 Genotypes Are No Major Factors Which Determine COVID-19 Severity. Schetelig J, Heidenreich F, Baldauf H, Trost S, Falk B, Hoßbach C, Real R, Roers A, Lindemann D, Dalpke A, Kolditz M, de With K, Bornhäuser M, Bonifacio EE, Rücker-Braun E, Lange V, Markert J, Barth R, Hofmann JA, Sauter J, Bernas SN, Schmidt AH. Front Immunol. 2021 Jul 26;12:698193. doi: 10.3389/fimmu.2021.698193. eCollection 2021.
Yi B, Dalpke AH (2021): Revisiting the intrageneric structure of the genus Pseudomonas with complete whole genome sequence information: Insights into Diversity and Host-related Genetic Determinants. Infect. Genet. Evol.,https://doi.org/10.1016/j.meegid.2021.105183,
Percy Schröttner, Thomas Riedel, Stephanie Müller und Boyke Bunk; Robinsoniella peoriensis: Was ist bisher bekannt? MIKROBIOLOGE 30.Jg. 2020
Metzger MI, Gräber SY, Stahl M, Sommerburg O, Mall MA, Dalpke AH and Boutin S (2021): A volatile and dynamic longitudinal microbiome is associated with less reduction in lung function in adolescents with cystic fibrosis. Front Cell Infect Microbiol, 11:763121. doi: 10.3389/fcimb.2021.763121
Anna Kopf, Boyke Bunk, Sina M. Coldewey, Florian Gunzer, Thomas Riedel and Percy Schröttner; Identification and Antibiotic Profiling of Wohlfahrtiimonas chitiniclastica, an Underestimated Human Pathogen Front. Microbiol., 22 September 2021 https://doi.org/10.3389/fmicb.2021.712775
Dumke R, Spornraft-Ragaller P (2021): Antibiotic resistance and genotypes of Mycoplasma genitalium during a resistance-guided treatment regime in a German university hospital.Antibiotics 10, 962. doi.org/10.3390/antibiotics10080962
Körholz JC, Gabrielyan A, Sowerby JM, Boschann F, Chen LS, Paul D, Brandt D, Kleymann J, Kolditz M, Töpfner N, Knöfler R, Jacobsen EM, Wolf C, Conrad K, Röber N, Lee-Kirsch MA, Smith KG, Mundlos S, Berner R, Dalpke A, Schuetz C, Rae W (2021): One gene, many facets: multiple immune pathway dysregulation in SOCS1 haploinsufficiency. Front Immunol 12:680334, https://doi.org/10.3389/fimmu.2021.680334
Haag L, Blankenburg J, Unrath M, Grabietz J, Kahre E, Galow L, Schneider J, Dalpke AH, Lück C, Büttner L, Berner R, Armann JP (2021): Prevalence and Transmission of SARS-CoV-2 in Childcare Facilities: A Longitudinal Study.J Pediatr: S0022-3476(21)00746-0. doi: 10.1016/j.jpeds.2021.07.054. Online ahead of print.
Yi B, Poetsch A, Stadtmüller M, Rost F, Winkler S, Dalpke, A (2021). Phylogenetic analysis of SARS-CoV-2 lineage development across the first and second waves in Eastern Germany in 2020: Insights into the cause of the second wave. Epidemiology and Infection, 1-9. doi:10.1017/S0950268821001461 in press
Kahre E, Galow L, Unrath M, Haag L, Blankenburg J, Dalpke AH, Lück C, Berner R, Armann JP (2021): Kinetics and seroprevalence of SARS-CoV-2 antibodies – a comparison of 3 different assays. Sci Rep 11(1):14893. doi:10.1038/s41598-021-94453-5
Leitz DHW*, Duerr J*, Mulugeta S, Agircan AS, Zimmermann S, Kawabe H, Dalpke AH, Beers MF, Mall MA (2021): Congenital deletion of Nedd4-2 in lung epithelial cells causes progressive alveolitis and pulmonary fibrosis in neonatal mice. Int. J. Mol. Sci. 22: 6146. https://doi.org/10.3390/ijms22116146
Schetelig J, Baldauf H, Wendler S, Heidenreich F, Real R, Kolditz M, Rosner A, Dalpke A, With K, Lange V, Markert J, Barth R, Bunzel C, Endert D, Hofmann JA, Sauter J, Bernas SN, Schmidt AH (2021): Risk Factors for a Severe Course of COVID-19 in Persons Aged 18 to 61.Dtsch Arztebl Int. 118(16):288-289. doi: 10.3238/arztebl.m2021.0200.
Galow L, Haag L, Kahre E, Blankenburg J, Dalpke AH, Lück C, Berner R, Armann JP (2021): Lower Household transmission rates of SARS-CoV-2 from children compared to adults. J Infect, 83(1):e34-e36, doi:https://doi.org/10.1016/j.jinf.2021.04.022,
Arweiler NB, Rahmel V, Alhamwe BA, Alhamdan F, Zemlin M, Boutin S, Dalpke A, Renz H (2021): Dental biofilm and saliva microbiome and its interplay with pediatric allergies. Microorganisms 9: 1330, https://doi.org/10.3390/microorganisms9061330
Meyer Sauteur PM, Pánisová E, Seiler M, Theiler M, Berger C, Dumke R. 2021. Mycoplasma pneumoniae genotypes and clinical outcome in children. J Clin Microbiol. 59:e00748-21. https://doi.org/10.1128/JCM .00748-21.
Probst K, Nurjadi D, Heeg K, Frede AM, Dalpke A, Boutin S (2021): Molecular detection of carbapenemases in Enterobacterales: A comparison of real-time multiplex PCR and whole genome sequencing.Antibiotics 10: 726, https://doi.org/10.3390/antibiotics10060726
Kirsten C, Unrath M, Lück C, Dalpke AH, Berner R, Armann JP (2021): SARS-CoV-2 seroprevalence in students and teachers – a longitudinal study from May to October 2020 in German secondary schools.BMJ Open 11(6):e049876, doi: 10.1136/bmjopen-2021-049876
Use of different approaches for the culture-independent typing of Mycoplasma pneumoniae from two geographically distinct regions. Roger Dumke, Nadia Rodriguez; https://doi.org/10.1016/j.mimet.2021.106239
Muhandes L, Chapsa M, Pippel M, Behrendt R, Ge Y, Dahl A, Yi B, Dalpke A, Winkler S, Hiller M, Boutin S, Beissert S, Jessberger R, Fallon PG, Roers A (2021): Low threshold for cutaneous allergen sensitization but no spontaneous dermatitis or atopy in filaggrin-deficient mice.J Invest Derm, S0022-202X(21)01155-6. doi: 10.1016/j.jid.2021.02.763
Galow L, Haag L, Kahre E, Blankenburg J, Dalpke AH, Lück C, Berner R, Armann JP (2021): Lower household transmission rates of SARS-CoV-2 from children compared to adults.Journal of Infection, doi:https://doi.org/10.1016/j.jinf.2021.04.022, in press
Antimicrobial resistance in clinical isolates of Ureaplasma spp. from samples in Germany.Dumke R (2021); Antimicrob Agents Chemother, 65:e02342-20. doi: 10.1128/AAC.02342-20.
Probst K, Boutin S, Bandilla M, Heeg K, Dalpke AH (2021): Fast and automated detection of common carbapenemase genes using multiplex real-time PCR on the BD MAX™ system. J Microbiol Meth, in press, https://doi.org/10.1016/j.mimet.2021.106224
Emergence of Macrolide-Resistant Mycoplasma pneumoniae during an Outbreak in a Primary School: Clinical Characterization of Hospitalized Children.; Hubert D, Dumke R, Weichert S, Welker S, Tenenbaum T, Schroten H (2021): Pathogens 10, 328. https://doi.org/10.3390/pathogens10030328.
Changes in the cystic fibrosis airway microbiome in response to CFTR modulator therapy; Yi B, Dalpke A, Boutin S (2021):Front Cell Infect Microbiol, 11:184, https://doi.org/10.3389/fcimb.2021.548613
Blood Group A Epitopes do not Facilitate Entry of SARS-CoV-2,; Schetelig J, Baldauf H, Wendler S, Heidenreich F, Real R, Kolditz M, Rosner A, Dalpke A, De With K, Lange V, Markert J, Barth R, Bunzel C, Endert D,
Hofmann JA, Sauter J, Bernas SN, Schmidt AH (20219: J Int Med, doi:10.1111/joim.13256,
Effects of Lumacaftor-Ivacaftor on Lung Clearance Index, Magnetic Resonance Imaging and
Airway Microbiome in Phe508del Homozygous Patients with Cystic Fibrosis : Graeber SY*, Boutin S*, Wielpütz MO, Joachim C, Frey DL, Wege S, Sommerburg O, Kauczor HU, Stahl M, Dalpke AH, Mall MA (2021). Ann.
Am. Thoracic Society,doi: 10.1513/AnnalsATS.202008-1054OC. PMID: 33600745
Evaluation of two methods to concentrate SARS-CoV-2 from untreated wastewater.; Dumke R, de la Cruz Barron M, Oertel R, Helm B, Kallies R, Berendonk TU, Dalpke A (2021): Pathogens, 10(2): 195; doi.org/10.3390/pathogens10020195 IF3,018
In Search of Patient Zero: Visual Analytics of Pathogen Transmission Pathways in Hospitals; Baumgartl T, Petzold M, Wunderlich, Höhn M, Archambault D, Lieser M, Dalpke A, Scheithauer S, Marschollek M, Eichel VM, Mutters NT,
HiGHmed Consortium, and von Landesberger T (2020); IEEE Trans. Vis. Comput. Graph., 1-11, doi10.1109/TVCG.2020.3030437
Frey DL*, Boutin S*, Dittrich S*, Graeber SY, Stahl M, Wege S, Herth F, Sommerburg O, Schultz C, Mall M, Dalpke A (2021): Relationship between airway dysbiosis, inflammation and lung function in adults with cystic fibrosis. J Cyst Fibr,
2020
Identification of an Intermediate Step in Foamy Virus Fusion. Dupont A, Glück IM, Ponti D, Stirnnagel K, Hütter S, Perrotton F, Stanke N, Richter S, Lindemann D, Lamb DC. Viruses. 2020 Dec 21;12(12):1472. doi: 10.3390/v12121472.
HIV-2 Vif and foamy virus Bet antagonize APOBEC3B by different mechanisms. Zhang Z, Perković M, Gu Q, Balakrishnan K, Sangwiman A, Häussinger D, Lindemann D, Münk C. Virology. 2021 Feb;554:17-27. doi: 10.1016/j.virol.2020.11.013.
1598. Clinical implications of azole-resistant vs. azole-susceptible invasive aspergillosis in hematological malignancy (CLARITY) – a multicenter study; Danila Seidel, PhD, Oliver Cornely, Prof, Marouan Zarrouk, PhD, Philipp Koehler, MD, Jacques F Meis, Jon Salmanton-García, MPH;MSC, Jörg Janne Vehreschild, Martin Christner, Stefanie K Gräfe, Iker Falces-Romero, Katrien Lagrou, Johan Maertens, Agustín Reséndiz- Sharpe, Zdenek Racil, Barbora Weinbergerová, Maricela Valerio, MD, PhD, Patricia Muñoz, Ola Blennow, Prof, Blandine Rammaert, Alen Ostojic, Yohann Le Govic, Cornelia Lass-Flörl, Prof, Susann Rössler, Karin van Dijk, Nick de Jong, Jörg Steinmann, Prof, Guillaume Desoubeaux, Prof, Nael Alakel, Dr, Nikolay Klimko, Enrico Schalk, Prof, Marie-Pierre Brenier-Pinchart, Carolina Garcia-Vidal, Anne Bergeron, Sung-Yeon Cho, MD, Willem J G Melchers, Maria J G T Vehreschild, Paul E Verweij; Open Forum Infectious Diseases, Volume 7, Issue Supplement_1, October 2020, Pages S795–S796, https://doi.org/10.1093/ofid/ofaa439.1778
Gas-forming infection of the kidneys due to facultative anaerobes; Rößler, S; Kiria, N; Schneider, R; Dtsch Arztebl Int 2020; 117: 870. DOI: 10.3238/arztebl.2020.0870a
Scedosporium apiospermum – Seltener Erreger einer mykotischen Keratitis; Janine Lenk FEBO, Frederik Raiskup, Lutz E. Pillunat, Susann Rößler; Der Ophthalmologe; volume 117, pages1225–1228(2020)
Sörensen M, Khakimov B, Nurjadi D, Boutin S, Yi B, Dalpke AH, Eigenbrod T (2020): Comparative evaluation of the effect of different growth media on in vitro sensitivity to azithromycin in multi-drug resistant Pseudomonas aeruginosa isolated from cystic fibrosis patients. Antimicrob Resist Infect Control 9(1):197. doi: 10.1186/s13756-020-00859-7
Baumgartl T, Petzold M, Wunderlich, Höhn M, Archambault D, Lieser M, Dalpke A, Scheithauer S, Marschollek M, Eichel VM, Mutters NT, HiGHmed Consortium, and von Landesberger T (2020): In Search of Patient Zero:Visual Analytics of Pathogen Transmission Pathways in Hospitals. IEEE Trans. Vis. Comput. Graph., 1-11, ahead pf print, doi10.1109/TVCG.2020.3030437
Galvanin A, Vogt LM, Grober A, Freund I, Ayadi L, Bourguignon-Igel V, Bessler L, Jacob D, Eigenbrod T, Marchand V, Dalpke A, Helm M, Motorin Y (2020): Bacterial tRNA 2′-O-methylation is dynamically regulated under stress conditions and modulates innate immune response. Nucl Acid Res, in press, doi:10.1093/nar/gkaa1123
Gradtke AC, Mentrup T, Lehmann CHK, Cabrera-Cabrera F, Desel C, Okakpu D, Assmann M, Dalpke A, Schaible UE, Dudziak D, Schröder B (2020): Deficiency of the Intramembrane Protease SPPL2a Alters Antimycobacterial Cytokine Responses of Dendritic Cells.J Immunol. doi: 10.4049/jimmunol.2000151, Online ahead of print PMID: 33239420, IF 4,886
Schröttner P, Tille E, Lück C, Bunk B Wound infection caused by Photobacterium damselae in a 32-year-old woman: case report and review of the literature GMS Infect Dis 2020; 8:Doc23 (20201117)
Amberge S, Kramer M, Schröttner P, Heidrich K, Schmelz R, Middeke JM, Gunzer F, Hampe J, Schetelig J, Bornhäuser M, Stölzel F. Clostridium Difficile infections in patients with AML or MDS undergoing allogeneic hematopoietic stem cell transplantation identify high risk for adverse outcome. Bone Marrow Transplant. 2020 Feb;55(2):367-375.
Mycobacterial Cord Factor Reprograms the Macrophage Response to IFN-γ towards Enhanced Inflammation yet Impaired Antigen Presentation and Expression of GBP1. Huber A, Killy B, Grummel N, Bodendorfer B, Paul S, Wiesmann V, Naschberger E, Zimmer J, Wirtz S, Schleicher U, Vera J, Ekici AB, Dalpke A, Lang R.Huber A, et al. J Immunol. 2020 Sep 15;205(6):1580-1592. doi: 10.4049/jimmunol.2000337. Epub 2020 Aug 12.J Immunol. 2020. PMID: 32796022
Siepmann T, Sedghi A, Simon E, Winzer S, Barlinn J, de With K, Mirow L, Wolz M, Gruenewald T, Schroettner P, von Bonin S, Pallesen LP, Rosengarten B, Schubert J, Lohmann T, Machetanz J, Spieth P, Koch T, Bornstein S, Reichmann H, Puetz V, Barlinn K.Siepmann T, et al. Increased risk of acute stroke among patients with severe COVID-19: a multicenter study and meta-analysis. Eur J Neurol. 2020 Sep 12. doi: 10.1111/ene.14535. Online ahead of print.
Siepmann T, Sedghi A, Barlinn J, de With K, Mirow L, Wolz M, Gruenewald T, Helbig S, Schroettner P, Winzer S, von Bonin S, Moustafa H, Pallesen LP, Rosengarten B, Schubert J, Gueldner A, Spieth P, Koch T, Bornstein S, Reichmann H, Puetz V, Barlinn K. Association of history of cerebrovascular disease with severity of COVID-19. J Neurol. 2020 Aug 6;. doi: 10.1007/s00415-020-10121-0. [Epub ahead of print] PubMed PMID: 32761508; PubMed Central PMCID: PMC7407424.
Boutin S, Dalpke AH. The Microbiome: A Reservoir to Discover New Antimicrobials Agents. Curr Top Med Chem. 2020;20(14):1291-9.
Schmitt FCF, Lipinski A, Hofer S, Uhle F, Nusshag C, Hackert T, Dalpke AH, Weigand MA, Brenner T and Boutin S (2020): Pulmonary microbiome patterns correlate with the course of the disease in patients with sepsis-induced ARDS. J Hosp Inf 105, 438-446;doi: https://doi.org/10.1016/j.jhin.2020.04.028
Kristian Barlinn, Timo Siepmann, Lars-Peder Pallesen, Simon Winzer, Annahita Sedghi, Percy Schroettner, Kristina Hochauf-Stange, Alexandra Prakapenia, Haidar Moustafa, Katja de With, JenniferLinn, Heinz Reichmann, Jessica Barlinn, Volker Puetz; Universal laboratory testing for SARS-CoV-2 in hyperacute stroke during the COVID-19 pandemic , doi.org/10.1016/j.jstrokecerebrovasdis.2020.105061
Zimmermann S, Horner S, Altwegg M, Dalpke AH (2020): Workflow optimization for syndromic diarrhea diagnosis using the molecular Seegene Allplex™ GI-Bacteria(I) Assay.Eur. J. Clin. Microbiol. 39(7), 1245-1250; DOI: 10.1007/s10096-020-03837-4 IF2,591
Blötz C, Singh N, Dumke R, Stülke J. Characterization of an immunoglobulin binding protein (IbpM) from Mycoplasma pneumoniae. Front Microbiol. 2020;685. doi: 10.3389/fmicb.2020.00685.
Boutin S, Dalpke AH (2020): The microbiome: a reservoir to discover new antimicrobials agents. Curr Top Med Chem. doi: 10.2174/1568026620666200320112731.
Cell surface processing of the P1 adhesin of Mycoplasma pneumoniae identifies novel domains that bind host molecules. Widjaja M, Berry IJ, Jarocki VM, Padula MP, Dumke R*, Djordjevic SP*. Sci Rep. 2020;10(1):6384.
Prevalence and antibiotic resistance of rectal Mollicutes in HIV-infected men who have sex with men at the University Hospital of Dresden, Germany. Spornraft-Ragaller P, Dumke R; Infection. 2020;48:259-265.
Pseudomonas aeruginosa Modulates the Antiviral Response of Bronchial Epithelial Cells. Sörensen M, Kantorek J, Byrnes L, Boutin S, Mall MA, Lasitschka F, Zabeck H, Nguyen D, Dalpke AH. Front Immunol. 2020 Feb 4;11:96. doi: 10.3389/fimmu.2020.00096
Stefan Zimmermann, Susanne Horner, Martin Altwegg & Alexander H. DalpkeWorkflow optimization for syndromic diarrhea diagnosis using the molecular Seegene Allplex™ GI-Bacteria(I) assay. Eur J Clin Microbiol Infect Dis (2020). https://doi.org/10.1007/s10096-020-03837-4
Sörensen M, Kantorek J, Byrnes L, Boutin S, Mall MA, Lasitschka F, Zabeck H, Nguyen D and Dalpke AH (2020): Pseudomonas aeruginosa Modulates the Antiviral Response of Bronchial Epithelial Cells.Front. Immunol. 11:96. doi: 10.3389/fimmu.2020.00096, in press
Mycoplasma pneumoniae infections, 11 countries in Europe and Israel, Beeton ML, Zhang XS, Uldum, SA, Bebear C, Dumke R, Gullsby K, Ieven M, Loens K, Nir-Paz R, Pereyre S, Spiller OB, Chalker VJ, the ESCMID Study Group for Mycoplasma and Chlamydia Infections (ESGMAC) Mycoplasma pneumoniae subgroup. 2011 to 2016. Euro Surveill. 2020, 25(2):pii=1900112.
Dumke R, Rust M, Glaunsinger T:MgpB types among Mycoplasma genitalium strains from men who have sex with men in Berlin, Germany, 2016-2018. Pathogens. 2020;9,12. doi: 10.3390/pathogens9010012
Doenhardt M, Seipolt B, Mense L, Winkler JL, Thürmer A, Rüdiger M, Berner R, Armann J.: Neonatal and young infant sepsis by Group B Streptococci and Escherichia coli: a single-center retrospective analysis in Germany-GBS screening implementation gaps and reduction in antibiotic resistance. Eur J Pediatr. 2020 May 23. doi: 10.1007/s00431-020-03659-8.
2019
Increased Neuronal Differentiation Efficiency in High Cell Density-Derived Induced Pluripotent Stem Cells. Srimasorn S, Kirsch M, Hallmeyer-Ellgner S, Lindemann D, Storch A, Hermann A. Stem Cells Int. 2019 Dec 4;2019:2018784. doi: 10.1155/2019/2018784.
Insights into Innate Sensing of Prototype Foamy Viruses in Myeloid Cells. Bergez M, Weber J, Riess M, Erdbeer A, Seifried J, Stanke N, Munz C, Hornung V, König R, Lindemann D. Viruses. 2019 Nov 26;11(12):1095. doi: 10.3390/v11121095.
Organization of multi-binding to host proteins: The glyceraldehyde-3-phosphate dehydrogenase (GAPDH) of Mycoplasma pneumoniae. Grimmer J, Dumke R: Microbiol Res. 2019;218:22-31.
RNA Modifications Modulate Activation of Innate Toll-Like Receptors. Freund I, Eigenbrod T, Helm M, Dalpke AH. Genes (Basel). 2019 Jan 29;10(2). pii: E92. doi: 10.3390/genes10020092. Review. PMID: 30699960 Free ArticleSimilar articles
First detection and characterization of macrolide-resistant Mycoplasma pneumoniae strains in Cuba. Rodriguez N, Mondeja B, Sardiñas R, Vega D, Dumke R. ; Int J Infect Dis. 2019;80:115-117.
Gut microbiome patterns correlate with higher postoperative complication rates after pancreatic surgery; Schmitt F, Brenner T, Uhle F, Loesch S, Hackert T., Ulrich A, Hofer S, Dalpke AH, Markus A, Weigand and Boutin S; BMC Microbiology (2019) 19:42; https://doi.org/10.1186/s12866-019-1399-5
Crucial role of nucleic acid sensing via endosomal Toll-like receptors for the defense of Streptococcus pyogenes in vitro and in vivo: Hafner A, Kolbe U, Freund I, Castiglia V, Kovarik P, Poth P, Herster F, Weigand MA, Weber AN, Dalpke AH and Eigenbrod T (2019): Front Immunol, 10:198.doi: 10.3389/fimmu.2019.00198, PMID: 30846984 Free PMC Article
Early Detection of Infection Chains & Outbreaks: Use Case Infection Control Stud Health Technol Inform. 2019; Volume 258: ICT for Health Science Research, A. Shabo (Shvo) et al. A. SARGEANT,1, T. von LANDESBERGER, C. BAIER, F. BANGE, A. DALPKE, T.ECKMANNS, S. GLÖCKNER, M. KAASE, G. KRAUSE, M. MARSCHOLLEK, B. MALONE, M. NIEPERT, S. REYa, A. WULFF, Consortium H, S. SCHEITHAUER, (Eds.), p. 245-246, doi:10.3233/978-1-61499-959-1-245
Long-term low rate of macrolide-resistant Mycoplasma pneumoniae strains in Germany. Dumke R, Ziegler T; Antimicrob Agents Chemother. 2019;63:e00455-19.
2'-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms. Freund I, Buhl DK, Boutin S, Kotter A, Pichot F, Marchand V, Vierbuchen T, Heine H, Motorin Y, Helm M, Dalpke AH, Eigenbrod T (2019). RNA, pii: rna.070243.118. doi: 10.1261/rna.070243.118
Detection of Robinsoniella peoriensis in multiple bone samples of a trauma patient Percy Schröttner, Kathleen Hartwich, Boyke Bunk, Isabel Schober, Sina Helbig, Wolfram W. Rudolph, Florian Gunzer; Anaerobe: 10.1016/j.anaerobe.2019.05.001; S1075-9964(19)30079-4; 10.1016/j.anaerobe.2019.05.001
Comparison of VITEK 2, MALDI-TOF MS, 16S rRNA gene sequencing, and whole-genome sequencing for identification of Roseomonas mucosa; Wolfram W. Rudolph, Florian Gunzer, Melanie Trauth, Boyke Bunk, Richard Bigge, Percy Schröttner; Microbial Pathogenesis, Volume 134, September 2019, 103576
Prevalence of macrolide- and fluoroquinolone-resistant Mycoplasma genitalium strains in clinical specimens from men who have sex with men of two sexually transmitted infection practices in Berlin, Germany. Dumke R, Ziegler T, Abbasi-Boroudjeni N, Rust M, Glaunsinger T.; Abstract; J Glob Antimicrob Resist. 2019;18:118-121.
How MALDI-TOF mass spectrometry can aid the diagnosis of hard-to-identify pathogenic bacteria – the rare and the unknown; Markus Kostrzewa, Elisabeth Nagy, Percy Schröttner & Arthur B. Pranada; Expert Review of Molecular Diagnostics, DOI: 10.1080/14737159.2019.1643238; To link to this article: https://doi.org/10.1080/14737159.2019.1643238
Bacterial biofilm composition in healthy subjects with and without caries experience. Schoilew K, Ueffing H, Dalpke A, Wolff B, Frese C, Wolff D, Boutin S. J Oral Microbiol;11(1):1633194. doi: 10.1080/20002297.2019.1633194.2019.
Amplicon-based microbiome study highlights the loss of diversity and the establishment of a set of species in patients with dentin caries. Wolff D, Frese C, Schoilew K, Dalpke A, Wolff B, Boutin S (2019). PLoS One. 14(7):e0219714. doi: 10.1371/journal.pone.0219714.
Wie beeinflusst das Mikrobiom den Verlauf der Mukoviszidose? Boutin S, Hammermann J, Dalpke A (2019): Päd. Praxis 92 (3): 391-400
Clostridium Difficile infections in patients with AML or MDS undergoing allogeneic hematopoietic stem cell transplantation identify high risk for adverse outcome. Amberge S, Kramer M, Schröttner P, Heidrich K, Schmelz R, Middeke JM, Gunzer F, Hampe J, Schetelig J, Bornhäuser M, Stölzel F.; Bone Marrow Transplant. 2019 Sep 18. doi: 10.1038/s41409-019-0678-y.
Comparative genomic analysis revealed high prevalence of inter-species in vivo transfer of carbapenem resistance plasmids in patients with hematological malignancies. Kocer K, Boutin S, Dalpke AH, Heeg K, Mutters NT, Nurjadi D.; Clin Microbiol Infect. 2019 Oct 22. pii: S1198-743X(19)30548-8. doi: 10.1016/j.cmi.2019.10.014. [Epub ahead of print] PMID: 31654794
O. Herchenröder, M. Löchelt, F. Buseyne, A. Gessain, M.A. Soares, A.S. Khan, and D.Lindemann. (2019). Twelfth International Foamy Virus Conference—Meeting Report. Viruses, 11(2): E134. Abstract
TraFo-CRISPR: Enhanced Genome Engineering by Transient Foamy Virus Vector-Mediated Delivery of CRISPR/Cas9 Components; F. Lindel, C.R.Dodt, N. Weidner, M. Noll, F. Bergemann, R. Behrendt, S. Fischer, J. Dietrich, M. Cartellieri, M.V. Hamann, and D. Lindemann. (2019). . Molecular Therapy Nucleic Acids, 18: 708-726. Abstract
Corrigendum to "Spumaretroviruses: Updated taxonomy and nomenclature; A.S. Khan, J. Bodem, F. Buseyne, A. Gessain, W. Johnson, J.H. Kuhn, J. Kuzmak, D.Lindemann, M.L. Linial, M. Löchelt, M. Materniak-Kornas, M.A. Soares, W.M. Switzer. (2018). " [Virology 516 (2018) 158-164]. Virology, 528: S0042-6822(18)30390-8. Abstract
Tödliches Reisemitbringsel in Sachsen. A. Thürmer, J. Seibt, M. Meinhardt. Ärzteblatt Sachsen 1/2019, 30. Jahrgang - Januar 2019
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